1GGT Blood Coagulation date Jan 25, 1994
title Three-Dimensional Structure Of A Transglutaminase: Human Blood Coagulation Factor Xiii
authors V.C.Yee, L.C.Pedersen, I.L.Trong, P.D.Bishop, R.E.Stenkamp, D.C.Teller
compound source
Molecule: Coagulation Factor Xiii
Chain: A, B
Ec: 2.3.2.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
symmetry Space Group: P 21 21 2
R_factor 0.216 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.200 182.700 93.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand
enzyme Transferase E.C.2.3.2.13 BRENDA
related structures by homologous chain: 1GGY
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThree-dimensional structure of a transglutaminase: human blood coagulation factor XIII., Yee VC, Pedersen LC, Le Trong I, Bishop PD, Stenkamp RE, Teller DC, Proc Natl Acad Sci U S A 1994 Jul 19;91(15):7296-300. PMID:7913750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (1ggt.pdb1.gz) 232 Kb
  • CSU: Contacts of Structural Units for 1GGT
  • Likely Quarternary Molecular Structure file(s) for 1GGT
  • Retrieve 1GGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GGT from S2C, [Save to disk]
  • View 1GGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GGT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GGT, from MSDmotif at EBI
  • Genome occurence of 1GGT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ggta4, region A:191-515 [Jmol] [rasmolscript] [script source]
        - Domain d1ggta2, region A:516-627 [Jmol] [rasmolscript] [script source]
        - Domain d1ggta3, region A:628-729 [Jmol] [rasmolscript] [script source]
        - Domain d1ggta1, region A:8-190 [Jmol] [rasmolscript] [script source]
        - Domain d1ggtb4, region B:191-515 [Jmol] [rasmolscript] [script source]
        - Domain d1ggtb2, region B:516-627 [Jmol] [rasmolscript] [script source]
        - Domain d1ggtb3, region B:628-727 [Jmol] [rasmolscript] [script source]
        - Domain d1ggtb1, region B:8-190 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ggt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ggt_A] [1ggt_B] [1ggt]
  • SWISS-PROT database: [P00488]
  • Domain organization of [F13A_HUMAN] by SWISSPFAM
  • Domain found in 1GGT: [TGc ] by SMART
  • Other resources with information on 1GGT
  • Community annotation for 1GGT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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