1GIC Lectin date Aug 08, 1996
title Concanavalin A Complexed With Methyl Alpha-D-Glucopyranoside
authors G.M.Bradbrook, T.Gleichmann, S.J.Harrop, J.R.Helliwell, J.Habash A.J.Kalb(Gilboa), L.Tong, T.C.M.Wan, J.Yariv
compound source
Molecule: Concanavalin A
Chain: A, B
 Organism_scientific: Canavalia Ensiformis
Organism_common: Jack Bean
Organism_taxid: 3823
symmetry Space Group: I 21 3
R_factor 0.170 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
167.800 167.800 167.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, GYP, MN enzyme
related structures by homologous chain: 1CON, 1SCR
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure solution of a cubic crystal of concanavalin A complexed with methyl alpha-D-glucopyranoside., Harrop SJ, Helliwell JR, Wan TC, Kalb AJ, Tong L, Yariv J, Acta Crystallogr D Biol Crystallogr. 1996 Jan 1;52(Pt 1):143-55. PMID:15299735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (1gic.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 1GIC
  • CSU: Contacts of Structural Units for 1GIC
  • Likely Quarternary Molecular Structure file(s) for 1GIC
  • Structure Factors (245 Kb)
  • Retrieve 1GIC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GIC from S2C, [Save to disk]
  • Re-refined 1gic structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GIC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GIC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GIC, from MSDmotif at EBI
  • Genome occurence of 1GIC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gica_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gicb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gic_B] [1gic] [1gic_A]
  • SWISS-PROT database: [P02866]
  • Domain organization of [CONA_CANEN] by SWISSPFAM
    • Other resources with information on 1GIC
  • Community annotation for 1GIC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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