1GII Transferase date Feb 06, 2001
title Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor
authors M.Ikuta, S.Nishimura
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: Cyclin Dependent Kinase 2
Ec: 2.7.1.37
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.912 72.427 53.965 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 1PU BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1KE9, 1Y8Y
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallographic approach to identification of cyclin-dependent kinase 4 (CDK4)-specific inhibitors by using CDK4 mimic CDK2 protein., Ikuta M, Kamata K, Fukasawa K, Honma T, Machida T, Hirai H, Suzuki-Takahashi I, Hayama T, Nishimura S, J Biol Chem 2001 Jul 20;276(29):27548-54. PMID:11335721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1gii.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1GII
  • CSU: Contacts of Structural Units for 1GII
  • Likely Quarternary Molecular Structure file(s) for 1GII
  • Retrieve 1GII in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GII from S2C, [Save to disk]
  • View 1GII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GII
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GII, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1giia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gii from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gii] [1gii_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1GII: [S_TKc ] by SMART
  • Other resources with information on 1GII
  • Community annotation for 1GII at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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