OCA Atlas for 1GJH

1GJH

Apoptosis

date

May 31, 2001

title

Human Bcl-2, Isoform 2

authors

A.M.Petros, A.Medek, D.G.Nettesheim, D.H.Kim, H.S.Yoon, K.Swift, E.D.Matayoshi, T.Oltersdorf, S.W.Fesik

compound

source

Molecule: Protein (Apoptosis Regulator Bcl-2 With Putative Flexible Loop Replaced With A Portion Of Apoptosis Regulator Bcl-X Protein);
Chain: A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

method

Solution NMR

note

1GJH supersedes 1G5O

related structures

by homologous chain: 1G5M

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structure of the antiapoptotic protein bcl-2., Petros AM, Medek A, Nettesheim DG, Kim DH, Yoon HS, Swift K, Matayoshi ED, Oltersdorf T, Fesik SW, Proc Natl Acad Sci U S A. 2001 Mar 13;98(6):3012-7. Epub 2001 Feb 27. PMID:11248023

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]

CSU: Contacts of Structural Units for 1GJH

Retrieve 1GJH in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1GJH from S2C, [Save to disk]

View 1GJH in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GJH

Cartoon representation from PDB Cartoon

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Crystal Contacts, from CryCo at Weizmann Institute

3D motif for 1GJH, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1gjha_, region A [Jmol] [rasmolscript] [script source]

Fold representative 1gjh from FSSP and Dali (Families of Structurally Similar Proteins)

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gjh_A] [1gjh]

SWISS-PROT database: [P10415]

Domain organization of [BCL2_HUMAN] by SWISSPFAM

Domains found in 1GJH: [BCL] [BH4 ] by SMART

Other resources with information on 1GJH

Community annotation for 1GJH at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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