1GJO Transferase date Jul 31, 2001
title The Fgfr2 Tyrosine Kinase Domain
authors T.A.Ceska, R.Owens, C.Doyle, P.Hamlyn, T.Crabbe, D.Moffat, J.Davis, R.Martin, M.J.Perry
compound source
Molecule: Fibroblast Growth Factor Receptor 2
Chain: A
Fragment: Tyrosine Kinase Domain Residues 465-768
Synonym: Fgfr-2, Keratinocyte
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: I 2 2 2
R_factor .214 R_Free .256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.758 80.983 120.059 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.4 Å
ligand SO4 enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1AGW, 1FGK
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1gjo.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 1GJO
  • CSU: Contacts of Structural Units for 1GJO
  • Likely Quarternary Molecular Structure file(s) for 1GJO
  • Retrieve 1GJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GJO from S2C, [Save to disk]
  • View 1GJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GJO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GJO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gjoa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gjo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gjo_A] [1gjo]
  • SWISS-PROT database: [P21802]
  • Domain organization of [FGFR2_HUMAN] by SWISSPFAM
  • Domain found in 1GJO: [TyrKc ] by SMART
  • Other resources with information on 1GJO
  • Community annotation for 1GJO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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