1GJZ Ubiquitin date Aug 06, 2001
title Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin
authors D.Bolton, P.A.Evans, K.Stott, R.W.Broadhurst
compound source
Molecule: Ubiquitin
Chain: A, B
Fragment: Residues 1-51
Engineered: Yes
Other_details: Fragment Contains First 51 Residues Of Human Ubiquitin Preceded At The N-Terminus By Glycine And Serine
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-4t3
methodSolution NMR
related structures by homologous chain: 1C3T
Primary referenceStructure and properties of a dimeric N-terminal fragment of human ubiquitin., Bolton D, Evans PA, Stott K, Broadhurst RW, J Mol Biol 2001 Dec 7;314(4):773-87. PMID:11733996
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (438 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1GJZ
  • Original NMR restraints for 1GJZ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1GJZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GJZ from S2C, [Save to disk]
  • View 1GJZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GJZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GJZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gjza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gjzb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gjz_A] [1gjz] [1gjz_B]
  • SWISS-PROT database: [P62988]
  • Domain organization of [UBIQ_HUMAN] by SWISSPFAM
  • Domain found in 1GJZ: [UBQ ] by SMART
  • Other resources with information on 1GJZ
  • Community annotation for 1GJZ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1GJZ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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