1GK7 Vimentin date Aug 08, 2001
title Human Vimentin Coil 1a Fragment (1a)
authors S.V.Strelkov, H.Herrmann, N.Geisler, R.Zimbelmann, U.Aebi, P.Burk
compound source
Molecule: Vimentin
Chain: A
Fragment: 1a, Residues 102-138
Engineered: Yes
Other_details: Two Extra Residues, Gs, At The N-Terminus Ar Of The Cloning Procedure
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 62 2 2
R_factor 0.197 R_Free 0.216
length a length b length c angle alpha angle beta angle gamma
56.770 56.770 58.420 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.40 Å
ligand SO4 enzyme
note 1GK7 is a representative structure

Primary referenceConserved segments 1A and 2B of the intermediate filament dimer: their atomic structures and role in filament assembly., Strelkov SV, Herrmann H, Geisler N, Wedig T, Zimbelmann R, Aebi U, Burkhard P, EMBO J 2002 Mar 15;21(6):1255-66. PMID:11889032
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1gk7.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1GK7
  • CSU: Contacts of Structural Units for 1GK7
  • Likely Quarternary Molecular Structure file(s) for 1GK7
  • Structure Factors (99 Kb)
  • Retrieve 1GK7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GK7 from S2C, [Save to disk]
  • Re-refined 1gk7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GK7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GK7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1GK7 from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GK7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gk7a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gk7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gk7] [1gk7_A]
  • SWISS-PROT database: [P08670]
  • Domain organization of [VIME_HUMAN] by SWISSPFAM
  • Other resources with information on 1GK7
  • Community annotation for 1GK7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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