1GMV Metallochaperone date Sep 24, 2001
title Structure Of Uree
authors H.K.Song, S.B.Mulrooney, R.Huber, R.Hausinger
compound source
Molecule: Uree
Chain: A, B
Fragment: Residues 1-143
Engineered: Yes
Mutation: Yes
 Organism_scientific: Klebsiella Aerogenes
Organism_taxid: 28451
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.2369 R_Free 0.3179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.114 80.415 99.848 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.8 Å
related structures by homologous chain: 1GMU
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of Klebsiella aerogenes UreE, a nickel-binding metallochaperone for urease activation., Song HK, Mulrooney SB, Huber R, Hausinger RP, J Biol Chem 2001 Dec 28;276(52):49359-64. PMID:11591723
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1gmv.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 1GMV
  • Likely Quarternary Molecular Structure file(s) for 1GMV
  • Structure Factors (51 Kb)
  • Retrieve 1GMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GMV from S2C, [Save to disk]
  • Re-refined 1gmv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GMV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GMV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gmva1, region A:1-70 [Jmol] [rasmolscript] [script source]
        - Domain d1gmva2, region A:71-138 [Jmol] [rasmolscript] [script source]
        - Domain d1gmvb1, region B:1-70 [Jmol] [rasmolscript] [script source]
        - Domain d1gmvb2, region B:71-137 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gmv_B] [1gmv] [1gmv_A]
  • SWISS-PROT database: [P18317]
  • Domain organization of [UREE_KLEAE] by SWISSPFAM
  • Domain found in 1GMV: [UreE_N ] by SMART
    • Other resources with information on 1GMV
  • Community annotation for 1GMV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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