1GNI Plasma Protein date Oct 05, 2001
title Human Serum Albumin Complexed With Cis-9-Octadecenoic Acid (Oleic Acid)
authors I.Petitpas, T.Gruene, A.A.Bhattacharya, S.Curry
compound source
Molecule: Serum Albumin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
symmetry Space Group: C 1 2 1
R_factor 0.209 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
188.386 38.923 95.477 90.00 104.86 90.00
method X-Ray Diffractionresolution 2.4 Å
ligand OLA enzyme
related structures by homologous chain: 1E7B, 1HK4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of human serum albumin complexed with monounsaturated and polyunsaturated fatty acids., Petitpas I, Grune T, Bhattacharya AA, Curry S, J Mol Biol 2001 Dec 14;314(5):955-60. PMID:11743713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1gni.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 1GNI
  • CSU: Contacts of Structural Units for 1GNI
  • Likely Quarternary Molecular Structure file(s) for 1GNI
  • Structure Factors (188 Kb)
  • Retrieve 1GNI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GNI from S2C, [Save to disk]
  • Re-refined 1gni structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GNI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GNI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GNI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gnia2, region A:197-388 [Jmol] [rasmolscript] [script source]
        - Domain d1gnia1, region A:3-196 [Jmol] [rasmolscript] [script source]
        - Domain d1gnia3, region A:389-584 [Jmol] [rasmolscript] [script source]
  • Fold representative 1gni from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gni_A] [1gni]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 1GNI: [ALBUMIN ] by SMART
  • Other resources with information on 1GNI
  • Community annotation for 1GNI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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