1GOO Hydrolase date Oct 22, 2001
title Thermostable Xylanase I From Thermoascus Aurantiacus - Cryoc Glycerol Complex
authors K.Eckert, C.Andrei, S.Larsen, L.Lo Leggio
compound source
Molecule: Endo-1,4-Beta-Xylanase
Chain: A
Synonym: Xylanase, 1,4-Beta-D-Xylan Xylanohydrolase, Taxi
Ec: 3.2.1.8
 Organism_scientific: Thermoascus Aurantiacus
Organism_taxid: 5087
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.610 58.947 50.752 90.00 111.67 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand GOL, PCA enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1GOM, 1GOQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSubstrate specificity and subsite mobility in T. aurantiacus xylanase 10A., Lo Leggio L, Kalogiannis S, Eckert K, Teixeira SC, Bhat MK, Andrei C, Pickersgill RW, Larsen S, FEBS Lett 2001 Dec 7;509(2):303-8. PMID:11741607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1goo.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1GOO
  • CSU: Contacts of Structural Units for 1GOO
  • Likely Quarternary Molecular Structure file(s) for 1GOO
  • Structure Factors (145 Kb)
  • Retrieve 1GOO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GOO from S2C, [Save to disk]
  • Re-refined 1goo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GOO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GOO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GOO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gooa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1goo] [1goo_A]
  • SWISS-PROT database: [P23360]
  • Domain organization of [XYNA_THEAU] by SWISSPFAM
  • Domain found in 1GOO: [Glyco_10 ] by SMART
    • Other resources with information on 1GOO
  • Community annotation for 1GOO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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