1GQB	Receptor	date	Nov 22, 2001
title	Human Mir-Receptor, Repeat 11
authors	R.Von Buelow, M.Dauter, Z.Dauter, K.R.Rajashankar, S.Grimme, B.Sc K.Von Figura, I.Uson
compound		source
Molecule: Cation-Independent Mannose-6-Phosphate Receptor Chain: A, B Fragment: Igf-II-Binding Domain, Repeat 11, Residues 1508-1 Synonym: Mannose-6-Phosphate Receptor, Insulin-Like Growth- Receptor, Ci Man-6-P Receptor, Ci-Mpr, 300 Kda Mannose 6-Ph Receptor, Mpr 300; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Bhk-21 Organ: Kidney Cell: Fibroblast Expression_system: Cricetinae Gen. Sp. Expression_system_taxid: 36483
symmetry	Space Group: C 1 2 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.426 49.060 74.380 90.00 129.01 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	BR	enzyme
related structures	by homologous chain: 1E6F, 1GP3
Gene Ontology	Chain Function Process Component A, B
Primary reference	Locating the anomalous scatterer substructures in halide and sulfur phasing., Uson I, Schmidt B, von Bulow R, Grimme S, von Figura K, Dauter M, Rajashankar KR, Dauter Z, Sheldrick GM, Acta Crystallogr D Biol Crystallogr. 2003 Jan;59(Pt 1):57-66. Epub 2002, Dec 19. PMID:12499540

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (1gqb.pdb1.gz) 23 Kb Biological Unit Coordinates (1gqb.pdb2.gz) 23 Kb LPC: Ligand-Protein Contacts for 1GQB CSU: Contacts of Structural Units for 1GQB Likely Quarternary Molecular Structure file(s) for 1GQB Structure Factors (498 Kb) Retrieve 1GQB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GQB from S2C, [Save to disk] Re-refined 1gqb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GQB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GQB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GQB, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gqba_, region A [Jmol] [rasmolscript] [script source]     - Domain d1gqbb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gqb] [1gqb_A] [1gqb_B] SWISS-PROT database: [P11717] Belongs to the mannose 6-phosphate receptor (m6pr) family according to TCDB. Domain organization of [MPRI_HUMAN] by SWISSPFAM

Other resources with information on 1GQB

Community annotation for 1GQB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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