1GQI Glucuronidase date Nov 26, 2001
title Structure Of Pseudomonas Cellulosa Alpha-D-Glucuronidase
authors D.Nurizzo, T.Nagy, H.J.Gilbert, G.J.Davies
compound source
Molecule: Alpha-Glucuronidase
Chain: A, B
Ec: 3.2.1.139
Engineered: Yes
Organism_scientific: Pseudomonas Cellulosa
Organism_taxid: 155077
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner (De3)
Expression_system_plasmid: Ptn1
symmetry Space Group: P 1
R_factor 0.133 R_Free 0.168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.912 74.682 87.587 115.18 93.14 109.33
method X-Ray Diffractionresolution 1.48 Å
ligand CO, EDO, MG enzyme Hydrolase E.C.3.2.1.139 BRENDA
related structures by homologous chain: 1H41
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structural basis for catalysis and specificity of the Pseudomonas cellulosa alpha-glucuronidase, GlcA67A., Nurizzo D, Nagy T, Gilbert HJ, Davies GJ, Structure. 2002 Apr;10(4):547-56. PMID:11937059
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (1gqi.pdb1.gz) 265 Kb
  • LPC: Ligand-Protein Contacts for 1GQI
  • CSU: Contacts of Structural Units for 1GQI
  • Likely Quarternary Molecular Structure file(s) for 1GQI
  • Structure Factors (1749 Kb)
  • Retrieve 1GQI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GQI from S2C, [Save to disk]
  • Re-refined 1gqi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GQI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GQI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1GQI 1GQIA 1GQIB from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GQI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gqia1, region A:152-712 [Jmol] [rasmolscript] [script source]
        - Domain d1gqia2, region A:5-151 [Jmol] [rasmolscript] [script source]
        - Domain d1gqib1, region B:152-712 [Jmol] [rasmolscript] [script source]
        - Domain d1gqib2, region B:5-151 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gqi] [1gqi_B] [1gqi_A]
  • SWISS-PROT database: [Q8VP74]
  • Domain organization of [Q8VP74_9GAMM] by SWISSPFAM
  • Other resources with information on 1GQI
  • Community annotation for 1GQI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science