1GTF Rna Binding Protein Rna date Jan 15, 2002
title The Structure Of The Trp Rna-Binding Attenuation Protein (Trap) Bound To A 53-Nucleotide Rna Molecule Containing Gaguu Repeats
authors N.H.Hopcroft, A.L.Wendt, P.Gollnick, A.A.Antson
compound source
Molecule: Trp Rna-Binding Attenuation Protein (Trap)
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R U, V;
Engineered: Yes
Other_details: Two Protein 11-Mers (Chains A To K And L To Residues 1 - 75 In Each Chain (Some N- And C-Terminal Resi Missing Due To Disorder);
Organism_scientific: Bacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg62052pgp1-2
Expression_system_plasmid: Ptzstmtrb

Molecule: (Gaguu)10gag 53-Nucleotide Rna
Chain: W

Synthetic: Yes
Other_details: Synthetic Rna. In-Vitro Transcription
symmetry Space Group: C 1 2 1
R_factor 0.194 R_Free 0.242
length a length b length c angle alpha angle beta angle gamma
142.077 111.493 138.232 90.00 117.28 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand TRP enzyme
related structures by homologous chain: 1WAP
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, P, B, H, D, R, I, G, U

Primary referenceSpecificity of TRAP-RNA interactions: crystal structures of two complexes with different RNA sequences., Hopcroft NH, Wendt AL, Gollnick P, Antson AA, Acta Crystallogr D Biol Crystallogr 2002 Apr;58(Pt 4):615-21. PMID:11914485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • Biological Unit Coordinates (1gtf.pdb1.gz) 138 Kb
  • Biological Unit Coordinates (1gtf.pdb2.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 1GTF
  • CSU: Contacts of Structural Units for 1GTF
  • Likely Quarternary Molecular Structure file(s) for 1GTF
  • Structure Factors (1687 Kb)
  • Retrieve 1GTF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GTF from S2C, [Save to disk]
  • Re-refined 1gtf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GTF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GTF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GTF, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gtfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gtfb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gtfc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1gtfd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1gtfe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1gtff_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1gtfg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1gtfh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1gtfi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1gtfj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1gtfk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1gtfl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1gtfm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1gtfn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1gtfo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1gtfp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1gtfq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1gtfr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1gtfs_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1gtft_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1gtfu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1gtfv_, region V [Jmol] [rasmolscript] [script source]
  • Fold representative 1gtf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gtf_P] [1gtf_H] [1gtf_V] [1gtf_F] [1gtf_E] [1gtf_C] [1gtf_S] [1gtf_L] [1gtf_G] [1gtf_O] [1gtf_U] [1gtf_D] [1gtf_M] [1gtf_N] [1gtf_I] [1gtf_W] [1gtf_B] [1gtf_R] [1gtf_Q] [1gtf_K] [1gtf_J] [1gtf_T] [1gtf_A] [1gtf]
  • SWISS-PROT database: [Q9X6J6]
  • Domain organization of [MTRB_BACST] by SWISSPFAM
  • Other resources with information on 1GTF
  • Community annotation for 1GTF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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