1GTO Transcription Regulation date Apr 23, 1996
title High Resolution Structure Of A Hyperstable Helical Bundle Pr Mutant
authors V.Agrawal, P.Predki, L.Regan, A.T.Brunger
compound source
Molecule: Rop
Chain: A, B, C
Synonym: Cole1 Repressor Of Primer
Engineered: Yes
Mutation: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: I 4 2 2
R_factor 0.224 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.117 95.117 85.572 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
related structures by homologous chain: 1B6Q, 1GMG
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceAmino-acid substitutions in a surface turn modulate protein stability., Predki PF, Agrawal V, Brunger AT, Regan L, Nat Struct Biol. 1996 Jan;3(1):54-8. PMID:8548455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1gto.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (1gto.pdb2.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1GTO
  • Likely Quarternary Molecular Structure file(s) for 1GTO
  • Structure Factors (274 Kb)
  • Retrieve 1GTO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GTO from S2C, [Save to disk]
  • Re-refined 1gto structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GTO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GTO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GTO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gtoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gtob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gtoc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gto_B] [1gto_C] [1gto] [1gto_A]
  • SWISS-PROT database: [P03051]
  • Domain organization of [ROP_ECOLX] by SWISSPFAM
    • Other resources with information on 1GTO
  • Community annotation for 1GTO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science