1GUM Transferase date Jun 11, 1998
title Human Glutathione Transferase A4-4 Without Ligands
authors C.M.Bruns, I.Hubatsch, M.Ridderstrom, B.Mannervik, J.A.Tainer
compound source
Molecule: Protein (Glutathione Transferase A4-4)
Chain: A, B, C, D, E, F, G, H
Synonym: Glutathione S-Transferase, Gst
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Tissue: Substantia Nigra
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_cellular_location: Cytoplasm
Expression_system_vector: Pkk-D
symmetry Space Group: P 21 21 2
R_factor 0.253 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.300 156.100 101.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Transferase E.C.2.5.1.18 BRENDA
related structures by homologous chain: 1GUL
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceHuman glutathione transferase A4-4 crystal structures and mutagenesis reveal the basis of high catalytic efficiency with toxic lipid peroxidation products., Bruns CM, Hubatsch I, Ridderstrom M, Mannervik B, Tainer JA, J Mol Biol 1999 May 7;288(3):427-39. PMID:10329152
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk]
  • Biological Unit Coordinates (1gum.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (1gum.pdb2.gz) 74 Kb
  • Biological Unit Coordinates (1gum.pdb3.gz) 76 Kb
  • Biological Unit Coordinates (1gum.pdb4.gz) 75 Kb
  • CSU: Contacts of Structural Units for 1GUM
  • Likely Quarternary Molecular Structure file(s) for 1GUM
  • Structure Factors (408 Kb)
  • Retrieve 1GUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GUM from S2C, [Save to disk]
  • Re-refined 1gum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GUM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GUM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1guma2, region A:4-80 [Jmol] [rasmolscript] [script source]
        - Domain d1guma1, region A:81-220 [Jmol] [rasmolscript] [script source]
        - Domain d1gumb2, region B:4-80 [Jmol] [rasmolscript] [script source]
        - Domain d1gumb1, region B:81-220 [Jmol] [rasmolscript] [script source]
        - Domain d1gumc2, region C:4-80 [Jmol] [rasmolscript] [script source]
        - Domain d1gumc1, region C:81-220 [Jmol] [rasmolscript] [script source]
        - Domain d1gumd2, region D:4-80 [Jmol] [rasmolscript] [script source]
        - Domain d1gumd1, region D:81-220 [Jmol] [rasmolscript] [script source]
        - Domain d1gume2, region E:4-80 [Jmol] [rasmolscript] [script source]
        - Domain d1gume1, region E:81-220 [Jmol] [rasmolscript] [script source]
        - Domain d1gumf2, region F:4-80 [Jmol] [rasmolscript] [script source]
        - Domain d1gumf1, region F:81-220 [Jmol] [rasmolscript] [script source]
        - Domain d1gumg2, region G:4-80 [Jmol] [rasmolscript] [script source]
        - Domain d1gumg1, region G:81-220 [Jmol] [rasmolscript] [script source]
        - Domain d1gumh2, region H:4-80 [Jmol] [rasmolscript] [script source]
        - Domain d1gumh1, region H:81-220 [Jmol] [rasmolscript] [script source]
  • Fold representative 1gum from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gum_C] [1gum_D] [1gum_E] [1gum_B] [1gum_G] [1gum_H] [1gum_A] [1gum_F] [1gum]
  • SWISS-PROT database: [O15217]
  • Domain organization of [GSTA4_HUMAN] by SWISSPFAM
  • Other resources with information on 1GUM
  • Community annotation for 1GUM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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