1GW7 Virus Viral Protein date Mar 08, 2002
title Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Capsid, By Combined Cryo-Em And X-Ray Crystallography.
authors C.San Martin, J.Huiskonen, J.K.H.Bamford, S.J.Butcher, S.D.Fulle D.H.Bamford, R.M.Burnett
compound source
Molecule: Major Capsid Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Protein P3
 Organism_scientific: Bacteriophage Prd1
Organism_taxid: 10658
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 13.50 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceMinor proteins, mobile arms and membrane-capsid interactions in the bacteriophage PRD1 capsid., San Martin C, Huiskonen JT, Bamford JK, Butcher SJ, Fuller SD, Bamford DH, Burnett RM, Nat Struct Biol 2002 Oct;9(10):756-63. PMID:12219080
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (596 Kb) [Save to disk]
  • Biological Unit Coordinates (1gw7.pdb1.gz) 34721 Kb
  • CSU: Contacts of Structural Units for 1GW7
  • Likely Quarternary Molecular Structure file(s) for 1GW7
  • Retrieve 1GW7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GW7 from S2C, [Save to disk]
    • View 1GW7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GW7
  • VIPERdb: visual, structural and computational analysis of 1GW7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GW7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gw7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gw7b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gw7c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1gw7d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1gw7e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1gw7f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1gw7g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1gw7h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1gw7i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1gw7j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1gw7k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1gw7l_, region L [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gw7] [1gw7_H] [1gw7_G] [1gw7_I] [1gw7_L] [1gw7_K] [1gw7_E] [1gw7_J] [1gw7_B] [1gw7_F] [1gw7_A] [1gw7_C] [1gw7_D]
  • SWISS-PROT database: [P22535]
  • Domain organization of [COAT3_BPPRD] by SWISSPFAM
    • Other resources with information on 1GW7
  • Community annotation for 1GW7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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