1GXE Cytoskeleton date Apr 03, 2002
title Central Domain Of Cardiac Myosin Binding Protein C
authors M.Pfuhl
compound source
Molecule: Myosin Binding Protein C, Cardiac-Type
Chain: A
Fragment: Domain C5, Residues 641-770
Synonym: Cardiac Mybp-C, C-Protein - Cardiac Muscle Isoform;
Engineered: Yes
Other_details: His-Tagged Protein
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Heart
Tissue: Muscle
Cell: Myocyte
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_plasmid: Pet8c
Other_details: Cardiac Protein
methodSolution NMR
note 1GXE is a representative structure
Primary referenceStructure, stability and dynamics of the central domain of cardiac myosin binding protein C (MyBP-C): implications for multidomain assembly and causes for cardiomyopathy., Idowu SM, Gautel M, Perkins SJ, Pfuhl M, J Mol Biol 2003 Jun 13;329(4):745-61. PMID:12787675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1GXE
  • Original NMR restraints for 1GXE from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1GXE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GXE from S2C, [Save to disk]
  • View 1GXE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GXE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GXE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gxea_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gxe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gxe] [1gxe_A]
  • SWISS-PROT database: [Q14896]
  • Domain organization of [MYPC3_HUMAN] by SWISSPFAM
  • Domain found in 1GXE: [IG ] by SMART
  • Alignments of the sequence of 1GXE with the sequences similar proteins can be viewed for 1GXE's classification [MYPC3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MYPC3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1GXE
  • Community annotation for 1GXE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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