1GXW Hydrolase date Apr 12, 2002
title The 2.2 A Resolution Structure Of Thermolysin Crystallized I Of Potassium Thiocyanate
authors J.F.Gaucher, M.Selkti, T.Prange, A.Tomas
compound source
Molecule: Thermolysin
Chain: A
Ec: 3.4.24.27
Organism_scientific: Bacillus Thermoproteolyticus
Organism_taxid: 1427
symmetry Space Group: P 61 2 2
R_factor 0.163 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.170 93.170 130.630 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.18 Å
ligand CA, LYS, SCN, VAL, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
related structures by homologous chain: 1FJT, 6TLI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 2.2 A resolution structure of thermolysin (TLN) crystallized in the presence of potassium thiocyanate., Gaucher JF, Selkti M, Prange T, Tomas A, Acta Crystallogr D Biol Crystallogr 2002 Dec;58(Pt 12):2198-200. PMID:12454500
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1gxw.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1GXW
  • CSU: Contacts of Structural Units for 1GXW
  • Likely Quarternary Molecular Structure file(s) for 1GXW
  • Structure Factors (132 Kb)
  • Retrieve 1GXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GXW from S2C, [Save to disk]
  • Re-refined 1gxw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GXW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GXW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gxwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gxw_A] [1gxw]
  • SWISS-PROT database: [P00800]
  • Domain organization of [THER_BACTH] by SWISSPFAM
  • Other resources with information on 1GXW
  • Community annotation for 1GXW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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