1GYV	Endocytosis	date	Apr 30, 2002
title	Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1, L7
authors	P.R.Evans, D.J.Owen, H.M.Mcmahon, H.M.Kent
compound		source
Molecule: Adapter-Related Protein Complex 1 Gamma 1 Subunit Chain: A Fragment: Appendage Domain, Residues 703-821 Synonym: Gamma-Adaptin, Golgi Adaptor Ha1ap1 Adaptin Gamma Clathrin Assembly Protein Complex 1 Gamma Large Chain; Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex 4t2
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.720 54.820 67.480 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.71 Å
related structures	by homologous chain: 1IU1
Gene Ontology	Chain Function Process Component A
Primary reference	Gamma-adaptin appendage domain: structure and binding site for Eps15 and gamma-synergin., Kent HM, McMahon HT, Evans PR, Benmerah A, Owen DJ, Structure (Camb) 2002 Aug;10(8):1139-48. PMID:12176391

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (1gyv.pdb1.gz) 22 Kb CSU: Contacts of Structural Units for 1GYV Likely Quarternary Molecular Structure file(s) for 1GYV Structure Factors (99 Kb) Retrieve 1GYV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GYV from S2C, [Save to disk] Re-refined 1gyv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GYV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GYV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GYV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gyva_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gyv] [1gyv_A] SWISS-PROT database: [P22892] Domain organization of [AP1G1_MOUSE] by SWISSPFAM Domain found in 1GYV: [Alpha_adaptinC2 ] by SMART

Other resources with information on 1GYV

Community annotation for 1GYV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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