1H10 Transferase date Jul 01, 2002
title High Resolution Structure Of The Pleckstrin Homology Domain Of Protein Kinase Bakt Bound To Ins(1,3,4,5)-Tetrakisphophate
authors C.C.Thomas, M.Deak, D.R.Alessi, D.M.F.Van Aalten
compound source
Molecule: Rac-Alpha Serinethreonine Kinase
Chain: A
Fragment: Pleckstrin Homology Domain, Residues 1-123
Synonym: Protein Kinase B (Alpha) Pleckstrin Homology, Rac-Pk-Alpha, Akt1, Pkb, Rac;
Ec: 2.7.1.-
Engineered: Yes
Other_details: Bound To Ins(1,3,4,5)-Tetrakisphophate, Selenomethionine Derivative
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1
symmetry Space Group: C 1 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.868 34.351 44.293 90.00 115.31 90.00
method X-Ray Diffractionresolution 1.4 Å
ligand 4IP, ACE, MSE enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1UNP, 1UNR
Primary referenceHigh-resolution structure of the pleckstrin homology domain of protein kinase b/akt bound to phosphatidylinositol (3,4,5)-trisphosphate., Thomas CC, Deak M, Alessi DR, van Aalten DM, Curr Biol 2002 Jul 23;12(14):1256-62. PMID:12176338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1h10.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1H10
  • CSU: Contacts of Structural Units for 1H10
  • Likely Quarternary Molecular Structure file(s) for 1H10
  • Structure Factors (147 Kb)
  • Retrieve 1H10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H10 from S2C, [Save to disk]
  • Re-refined 1h10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H10
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1H10 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1H10, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h10a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1h10 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h10] [1h10_A]
  • SWISS-PROT database: [P31749]
  • Domain organization of [AKT1_HUMAN] by SWISSPFAM
  • Domain found in 1H10: [PH ] by SMART
  • Alignments of the sequence of 1H10 with the sequences similar proteins can be viewed for 1H10's classification [AKT1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AKT1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1H10
  • Community annotation for 1H10 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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