1H1W	Transferase	date	Jul 23, 2002
title	High Resolution Crystal Structure Of The Human Pdk1 Catalyti
authors	R.M.Biondi, D.Komander, C.C.Thomas, J.M.Lizcano, M.Deak, D.R.Ales D.M.F.Van Aalten
compound		source
Molecule: 3-Phosphoinositide Dependent Protein Kinase-1 Chain: A Fragment: Kinase Catalytic Domain, Residues 71-359 Synonym: Hpdk1 Ec: 2.7.11.1 Engineered: Yes Other_details: Activation Loop Phosphorylation (Ser241)		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf21 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 32 2 1	R_factor 0.196 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.013 123.013 47.624 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ATP, GOL, SEP, SO4	enzyme	Transferase E.C.2.7.11.1 BRENDA
related structures	by homologous chain: 1Z5M, 2BIY
Gene Ontology	Chain Function Process Component A
Primary reference	High resolution crystal structure of the human PDK1 catalytic domain defines the regulatory phosphopeptide docking site., Biondi RM, Komander D, Thomas CC, Lizcano JM, Deak M, Alessi DR, van Aalten DM, EMBO J. 2002 Aug 15;21(16):4219-28. PMID:12169624

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (1h1w.pdb1.gz) 105 Kb LPC: Ligand-Protein Contacts for 1H1W CSU: Contacts of Structural Units for 1H1W Likely Quarternary Molecular Structure file(s) for 1H1W Structure Factors (209 Kb) Retrieve 1H1W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1H1W from S2C, [Save to disk] Re-refined 1h1w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1H1W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1H1W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1H1W, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1h1wa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1h1w_A] [1h1w] SWISS-PROT database: [O15530] Domain organization of [PDPK1_HUMAN] by SWISSPFAM Domain found in 1H1W: [S_TKc ] by SMART

Other resources with information on 1H1W

Community annotation for 1H1W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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