1H3H Protein-Binding date Sep 03, 2002
title Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain
authors Q.Liu, D.Berry, P.Nash, T.Pawson, C.J.Mcglade, S.S.Li
compound source
Molecule: Grb2-Related Adaptor Protein 2
Chain: A
Fragment: C-Terminal Sh3 Domain, Residues 263-322
Synonym: Gads Protein, Grblg, Grb2l
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell: T-Lymphocyte
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2tk

Molecule: Lymphocyte Cytosolic Protein 2
Chain: B
Fragment: Residues 226-235
Synonym: Slp-76
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Paed4
methodSolution NMR
related structures by homologous chain: 1JOJ
Primary referenceStructural basis for specific binding of the Gads SH3 domain to an RxxK motif-containing SLP-76 peptide: a novel mode of peptide recognition., Liu Q, Berry D, Nash P, Pawson T, McGlade CJ, Li SS, Mol Cell. 2003 Feb;11(2):471-81. PMID:12620234
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]
  • Biological Unit Coordinates (1h3h.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1H3H
  • Original NMR restraints for 1H3H from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1H3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H3H from S2C, [Save to disk]
  • View 1H3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H3H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1H3H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h3ha_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1h3h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h3h_A] [1h3h] [1h3h_B]
  • SWISS-PROT database: [O89100] [Q13094]
  • Domain organization of [GRAP2_MOUSE] [LCP2_HUMAN] by SWISSPFAM
  • Domain found in 1H3H: [SH3 ] by SMART
  • Other resources with information on 1H3H
  • Community annotation for 1H3H at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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