1H4O Oxidoreductase date May 11, 2001
title Monoclinic Form Of Human Peroxiredoxin 5
authors J.P.Declercq, C.Evrard
compound source
Molecule: Peroxiredoxin 5
Chain: A, B, C, D, E, F, G, H
Fragment: Residues 54-214
Synonym: Prdx5, Prxv, Aoeb166, Pmp20, Arc1
Ec: 1.11.1.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Lung
Expression_system: Escherichia Coli M15
Expression_system_taxid: 1007065
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.790 66.490 141.240 90.00 117.54 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand BEZ enzyme Oxidoreductase E.C.1.11.1.15 BRENDA
related structures by homologous chain: 1OC3, 1URM
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCrystal structure of human peroxiredoxin 5, a novel type of mammalian peroxiredoxin at 1.5 A resolution., Declercq JP, Evrard C, Clippe A, Stricht DV, Bernard A, Knoops B, J Mol Biol. 2001 Aug 24;311(4):751-9. PMID:11518528
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (1h4o.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (1h4o.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (1h4o.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (1h4o.pdb4.gz) 31 Kb
  • Biological Unit Coordinates (1h4o.pdb5.gz) 30 Kb
  • Biological Unit Coordinates (1h4o.pdb6.gz) 30 Kb
  • Biological Unit Coordinates (1h4o.pdb7.gz) 30 Kb
  • Biological Unit Coordinates (1h4o.pdb8.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1H4O
  • CSU: Contacts of Structural Units for 1H4O
  • Likely Quarternary Molecular Structure file(s) for 1H4O
  • Structure Factors (2005 Kb)
  • Retrieve 1H4O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H4O from S2C, [Save to disk]
  • Re-refined 1h4o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H4O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H4O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H4O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h4oa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h4ob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1h4oc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1h4od_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1h4oe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1h4of_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1h4og_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1h4oh_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h4o_C] [1h4o_F] [1h4o_G] [1h4o_D] [1h4o_E] [1h4o_A] [1h4o_B] [1h4o_H] [1h4o]
  • SWISS-PROT database: [P30044]
  • Domain organization of [PRDX5_HUMAN] by SWISSPFAM
  • Other resources with information on 1H4O
  • Community annotation for 1H4O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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