1H5J	Oxidoreductase	date	May 22, 2001
title	X-Ray Induced Reduction Of Horseradish Peroxidase C1a Compound III (67-78% Dose)
authors	G.I.Berglund, G.H.Carlsson, J.Hajdu, A.T.Smith, H.Szoke, A.Henriksen
compound		source
Molecule: Peroxidase C1a Chain: A Ec: 1.11.1.7 Engineered: Yes		Organism_scientific: Armoracia Rusticana Organism_common: Horseradish Organism_taxid: 3704 Expression_system: Escherichia Coli Expression_system_taxid: 562 Other_details: Synthetic Gene
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.318 67.392 117.467 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	ACT, CA, HEM, PEO	enzyme	Oxidoreductase E.C.1.11.1.7 BRENDA
related structures	by homologous chain: 1H5D, 1H5I
Gene Ontology	Chain Function Process Component A peroxidase activity
Primary reference	The catalytic pathway of horseradish peroxidase at high resolution., Berglund GI, Carlsson GH, Smith AT, Szoke H, Henriksen A, Hajdu J, Nature 2002 May 23;417(6887):463-8. PMID:12024218

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (1h5j.pdb1.gz) 59 Kb LPC: Ligand-Protein Contacts for 1H5J CSU: Contacts of Structural Units for 1H5J Likely Quarternary Molecular Structure file(s) for 1H5J Structure Factors (436 Kb) Retrieve 1H5J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1H5J from S2C, [Save to disk] Re-refined 1h5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1H5J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1H5J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1H5J, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1h5ja_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1h5j] [1h5j_A] SWISS-PROT database: [P00433] Domain organization of [PER1A_ARMRU] by SWISSPFAM

Other resources with information on 1H5J

Community annotation for 1H5J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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