1H6J Nucleotidyltransferase date Jun 17, 2001
title The Three-Dimensional Structure Of Capsule-Specific Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From Escherichia Coli
authors S.Jelakovic, K.Jann, G.E.Schulz
compound source
Molecule: 3-Deoxy-Manno-Octulosonate Cytidylyltransferase
Chain: A, B
Synonym: Cmp-Kdo Synthetase, Cks, Cmp-2-Keto-3- Deoxyoctulosonic Acid Synthetase, Cmp-2-Keto-3-Deoxy-Manno -Octonic Acid Synthetase;
Ec: 2.7.7.38
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: K5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.090 133.460 48.330 90.00 102.51 90.00
method X-Ray Diffractionresolution 2.32 Å
ligand
enzyme Transferase E.C.2.7.7.38 BRENDA
related structures by homologous chain: 1GQ9
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe three-dimensional structure of capsule-specific CMP: 2-keto-3-deoxy-manno-octonic acid synthetase from Escherichia coli., Jelakovic S, Jann K, Schulz GE, FEBS Lett 1996 Aug 5;391(1-2):157-61. PMID:8706906
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1h6j.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1H6J
  • Likely Quarternary Molecular Structure file(s) for 1H6J
  • Structure Factors (200 Kb)
  • Retrieve 1H6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H6J from S2C, [Save to disk]
  • View 1H6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H6J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H6J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h6ja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h6jb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h6j] [1h6j_B] [1h6j_A]
  • SWISS-PROT database: [P42216]
  • Domain organization of [KPSU5_ECOLX] by SWISSPFAM
  • Other resources with information on 1H6J
  • Community annotation for 1H6J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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