1H71 Hydrolase date Jul 02, 2001
title Psychrophilic Protease From Pseudoalteromonas 'Tac II 18'
authors V.Villeret, F.Van Petegem, N.Aghajari, J.P.Chessa, C.Gerday, R.H J.Van Beeumen
compound source
Molecule: Serralysin
Chain: P
Fragment: Residues 18-480
Synonym: Alkaline Protease
Ec: 3.4.24.40
Organism_scientific: Pseudomonas Sp. Tac II 18
Organism_taxid: 76981
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.000 57.550 161.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA, ZN enzyme Hydrolase E.C.3.4.24.40 BRENDA
related structures by homologous chain: 1AKL, 1O0Q
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceCrystal structures of a psychrophilic metalloprotease reveal new insights into catalysis by cold-adapted proteases., Aghajari N, Van Petegem F, Villeret V, Chessa JP, Gerday C, Haser R, Van Beeumen J, Proteins 2003 Mar 1;50(4):636-47. PMID:12577270
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1h71.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 1H71
  • CSU: Contacts of Structural Units for 1H71
  • Likely Quarternary Molecular Structure file(s) for 1H71
  • Structure Factors (218 Kb)
  • Retrieve 1H71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H71 from S2C, [Save to disk]
  • Re-refined 1h71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H71
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H71, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h71p1, region P:245-463 [Jmol] [rasmolscript] [script source]
        - Domain d1h71p2, region P:3-244 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h71_P] [1h71]
  • SWISS-PROT database: [O69771]
  • Domain organization of [O69771_9PSED] by SWISSPFAM
  • Domain found in 1H71: [ZnMc ] by SMART
  • Other resources with information on 1H71
  • Community annotation for 1H71 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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