1H76 Iron Transport date Jul 03, 2001
title The Crystal Structure Of Diferric Porcine Serum Transferrin
authors D.R.Hall, J.M.Hadden, G.A.Leonard, S.Bailey, M.Neu, M.Winn, P.F.Li
compound source
Molecule: Serotransferrin
Chain: A
Synonym: Siderophilin, Beta-1-Metal Binding Globulin
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Other_details: Blood
symmetry Space Group: C 1 2 1
R_factor 0.136 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
223.770 44.890 78.860 90.00 105.39 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand CO3, FE, NAG enzyme
note 1H76 (Molecule of the Month:pdb35, pdb37)
related structures by homologous chain: 1FQF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal and molecular structures of diferric porcine and rabbit serum transferrins at resolutions of 2.15 and 2.60 A, respectively., Hall DR, Hadden JM, Leonard GA, Bailey S, Neu M, Winn M, Lindley PF, Acta Crystallogr D Biol Crystallogr 2002 Jan;58(Pt 1):70-80. PMID:11752780
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1h76.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1H76
  • CSU: Contacts of Structural Units for 1H76
  • Likely Quarternary Molecular Structure file(s) for 1H76
  • Structure Factors (304 Kb)
  • Retrieve 1H76 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H76 from S2C, [Save to disk]
  • Re-refined 1h76 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H76 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H76
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H76, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h76a1, region A:3-333 [Jmol] [rasmolscript] [script source]
        - Domain d1h76a2, region A:342-687 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h76] [1h76_A]
  • SWISS-PROT database: [P09571]
  • Domain organization of [TRFE_PIG] by SWISSPFAM
  • Domain found in 1H76: [TR_FER ] by SMART
  • Other resources with information on 1H76
  • Community annotation for 1H76 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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