1H7M Ribosomal Protein date Jul 09, 2001
title Ribosomal Protein L30e From Thermococcus Celer
authors Y.W.Chen, K.B.Wong
compound source
Molecule: 50s Ribosomal Protein L30e
Chain: A
Synonym: Rpl30e, Rpl30
Engineered: Yes
Organism_scientific: Thermococcus Celer
Organism_taxid: 2264
Atcc: 35543
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Prset-A
symmetry Space Group: P 61
R_factor 0.165 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.320 48.320 86.420 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.96 Å
related structures by homologous chain: 1W40, 1W42
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of ribosomal protein L30e from the extreme thermophile Thermococcus celer: thermal stability and RNA binding., Chen YW, Bycroft M, Wong KB, Biochemistry 2003 Mar 18;42(10):2857-65. PMID:12627951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1h7m.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1H7M
  • Likely Quarternary Molecular Structure file(s) for 1H7M
  • Structure Factors (56 Kb)
  • Retrieve 1H7M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H7M from S2C, [Save to disk]
  • Re-refined 1h7m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H7M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H7M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1H7M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h7ma_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1h7m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h7m] [1h7m_A]
  • SWISS-PROT database: [P29160]
  • Domain organization of [RL30E_THECE] by SWISSPFAM
  • Other resources with information on 1H7M
  • Community annotation for 1H7M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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