1H8A Transcription Dna date Jan 31, 2001
title Crystal Structure Of Ternary Protein-Dna Complex3
authors T.H.Tahirov, K.Ogata
compound source
Molecule: Caatenhancer Binding Protein Beta
Chain: A, B
Fragment: Residues 259-336
Synonym: Cebp Beta, Nfil-6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Par2156

Molecule: Myb Transforming Protein
Chain: C
Fragment: Residues 1-128
Synonym: Amv V-Myb
Engineered: Yes

Organism_scientific: Avian Myeloblastosis Virus
Organism_taxid: 11866
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Par2156

Molecule: Dna(5'-(Gpaptpgptpgpgpcpgpcpap Aptpcpcptptpapapcpgpgpapcptpg)-3');
Chain: D
Fragment: Fragment From Tom-1a Promoter
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna(5'-(Cpcpapgptpcpcpgptptpap Apgpgpaptptpgpcpgpcpcpapcpapt)-3');
Chain: E
Fragment: Fragment From Tom-1a Promoter
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.245 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.860 166.700 39.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.23 Å
related structures by homologous chain: 1GU5, 1GV2, 1H89
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanism of c-Myb-C/EBP beta cooperation from separated sites on a promoter., Tahirov TH, Sato K, Ichikawa-Iwata E, Sasaki M, Inoue-Bungo T, Shiina M, Kimura K, Takata S, Fujikawa A, Morii H, Kumasaka T, Yamamoto M, Ishii S, Ogata K, Cell 2002 Jan 11;108(1):57-70. PMID:11792321
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1h8a.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 1H8A
  • Likely Quarternary Molecular Structure file(s) for 1H8A
  • Structure Factors (443 Kb)
  • Retrieve 1H8A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H8A from S2C, [Save to disk]
  • Re-refined 1h8a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H8A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H8A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H8A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h8aa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h8ab_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1h8ac2, region C:144-191 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ac1, region C:87-143 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h8a_A] [1h8a_D] [1h8a_B] [1h8a_E] [1h8a_C] [1h8a]
  • SWISS-PROT database: [P17676] [P01104]
  • Domain organization of [CEBPB_HUMAN] [MYB_AVIMB] by SWISSPFAM
  • Domains found in 1H8A: [BRLZ] [SANT ] by SMART
  • Other resources with information on 1H8A
  • Community annotation for 1H8A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science