1HA6 Immune System date Mar 28, 2001
title Nmr Solution Structure Of Murine Ccl20mip-3a Chemokine
authors J.M.Perez-Canadillas, A.Zaballos, J.Gutierrez, R.Varona, F.Roncal, J.P.Albar, G.Marquez, M.Bruix
compound source
Molecule: Macrophage Inflammatory Protein 3 Alpha
Chain: A
Synonym: Mip-3-Alpha, Cc Chemokine Larc
 Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Tissue: Muscle
Cellular_location: Secreted
methodSolution NMR
related structures by homologous chain: 1M8A
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR solution structure of murine CCL20/MIP-3alpha, a chemokine that specifically chemoattracts immature dendritic cells and lymphocytes through its highly specific interaction with the beta-chemokine receptor CCR6., Perez-Canadillas JM, Zaballos A, Gutierrez J, Varona R, Roncal F, Albar JP, Marquez G, Bruix M, J Biol Chem 2001 Jul 27;276(30):28372-9. PMID:11373289
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (373 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1HA6
  • Original NMR restraints for 1HA6 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1HA6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HA6 from S2C, [Save to disk]
    • View 1HA6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HA6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HA6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ha6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ha6_A] [1ha6]
  • SWISS-PROT database: [O89093]
  • Domain organization of [CCL20_MOUSE] by SWISSPFAM
  • Domain found in 1HA6: [SCY ] by SMART
    • Other resources with information on 1HA6
  • Community annotation for 1HA6 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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