1HAP	Hydrolase Hydrolase Inhibitor Dna	date	Oct 03, 1995
title	Complex Of Human Alpha-Thrombin With A 15mer Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of Dna)
authors	K.Padmanabhan, A.Tulinsky
compound		source
Molecule: 5'-D(Gpgptptpgpgptpgptpgpgptptpgpg Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Thrombin Light Chain Chain: L Fragment: Residues 328-363 Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Thrombin Heavy Chain Chain: H Fragment: Residues 364-622 Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.280 77.610 100.020 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	0G6	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
related structures	by homologous chain: 1BMN, 1HRT
Gene Ontology	Chain Function Process Component H L
Primary reference	An ambiguous structure of a DNA 15-mer thrombin complex., Padmanabhan K, Tulinsky A, Acta Crystallogr D Biol Crystallogr. 1996 Mar 1;52(Pt 2):272-82. PMID:15299700

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (1hap.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 1HAP CSU: Contacts of Structural Units for 1HAP Likely Quarternary Molecular Structure file(s) for 1HAP Retrieve 1HAP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1HAP from S2C, [Save to disk]

View 1HAP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1HAP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1HAP, from MSDmotif at EBI Genome occurence of 1HAP's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1hap.1, region L:,H [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1hap_H] [1hap] [1hap_L] [1hap_D] [1hap_P] SWISS-PROT database: [P00734] Domain organization of [THRB_HUMAN] by SWISSPFAM Domain found in 1HAP: [Tryp_SPc ] by SMART

Other resources with information on 1HAP

Community annotation for 1HAP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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