1HCJ	Luminescent Protein	date	May 04, 2001
title	Photoproduct Of The Wild-Type Aequorea Victoria Green Fluore Protein
authors	J.J.Van Thor, T.Gensch, K.J.Hellingwerf, L.Johnson
compound		source
Molecule: Green Fluorescent Protein Chain: A, B, C, D Synonym: Gfp Engineered: Yes		Organism_scientific: Aequorea Victoria Organism_taxid: 6100 Organ: Photogenic Organ Tissue: Circumoral Ring Canal Gene: Gfp Expression_system: Escherichia Coli M15 Expression_system_taxid: 1007065 Expression_system_cellular_location: Cytoplasm Expression_system_gene: Gfp
symmetry	Space Group: P 1 2 1	R_factor 0.209 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.770 65.670 110.500 90.00 103.88 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ABA, GYS	enzyme
related structures	by homologous chain: 1QYO, 1QYQ
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Phototransformation of green fluorescent protein with UV and visible light leads to decarboxylation of glutamate 222., van Thor JJ, Gensch T, Hellingwerf KJ, Johnson LN, Nat Struct Biol 2002 Jan;9(1):37-41. PMID:11740505

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk] Biological Unit Coordinates (1hcj.pdb1.gz) 156 Kb Biological Unit Coordinates (1hcj.pdb2.gz) 156 Kb LPC: Ligand-Protein Contacts for 1HCJ CSU: Contacts of Structural Units for 1HCJ Likely Quarternary Molecular Structure file(s) for 1HCJ Structure Factors (653 Kb) Retrieve 1HCJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1HCJ from S2C, [Save to disk] Re-refined 1hcj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1HCJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1HCJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1HCJ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1hcja_, region A [Jmol] [rasmolscript] [script source]     - Domain d1hcjb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1hcjc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1hcjd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1hcj_B] [1hcj] [1hcj_C] [1hcj_A] [1hcj_D] SWISS-PROT database: [P42212] Domain organization of [GFP_AEQVI] by SWISSPFAM

Other resources with information on 1HCJ

Community annotation for 1HCJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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