1HCJ Luminescent Protein date May 04, 2001
title Photoproduct Of The Wild-Type Aequorea Victoria Green Fluore Protein
authors J.J.Van Thor, T.Gensch, K.J.Hellingwerf, L.Johnson
compound source
Molecule: Green Fluorescent Protein
Chain: A, B, C, D
Synonym: Gfp
Engineered: Yes
Organism_scientific: Aequorea Victoria
Organism_taxid: 6100
Organ: Photogenic Organ
Tissue: Circumoral Ring Canal
Gene: Gfp
Expression_system: Escherichia Coli M15
Expression_system_taxid: 1007065
Expression_system_cellular_location: Cytoplasm
Expression_system_gene: Gfp
symmetry Space Group: P 1 2 1
R_factor 0.209 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.770 65.670 110.500 90.00 103.88 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ABA, GYS enzyme
related structures by homologous chain: 1QYO, 1QYQ
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referencePhototransformation of green fluorescent protein with UV and visible light leads to decarboxylation of glutamate 222., van Thor JJ, Gensch T, Hellingwerf KJ, Johnson LN, Nat Struct Biol 2002 Jan;9(1):37-41. PMID:11740505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (1hcj.pdb1.gz) 160 Kb
  • Biological Unit Coordinates (1hcj.pdb2.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 1HCJ
  • CSU: Contacts of Structural Units for 1HCJ
  • Likely Quarternary Molecular Structure file(s) for 1HCJ
  • Structure Factors (653 Kb)
  • Retrieve 1HCJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HCJ from S2C, [Save to disk]
  • Re-refined 1hcj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HCJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HCJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HCJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hcja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hcjb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hcjc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1hcjd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1hcj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hcj_B] [1hcj] [1hcj_C] [1hcj_A] [1hcj_D]
  • SWISS-PROT database: [P42212]
  • Domain organization of [GFP_AEQVI] by SWISSPFAM
  • Other resources with information on 1HCJ
  • Community annotation for 1HCJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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