1HD4 Glycoprotein date Nov 07, 2000
title Solution Structure Of The A-Subunit Of Human Chorionic Gonad [Modeled With Diantennary Glycan At Asn78]
authors P.J.A.Erbel, Y.Karimi-Nejad, J.A.Van Kuik, R.Boelens, J.P.Kamerl J.F.G.Vliegenthart
compound source
Molecule: Chorionic Gonadotropin
Chain: A
Other_details: Glycosylated At Asn52 And Asn78
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Isolated From Urine Of Pregnant Woman
methodSolution NMR
ligand BMA, GAL, MAN, NAG enzyme
related structures by homologous chain: 1E9J, 1FL7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEffects of the N-linked glycans on the 3D structure of the free alpha-subunit of human chorionic gonadotropin., Erbel PJ, Karimi-Nejad Y, van Kuik JA, Boelens R, Kamerling JP, Vliegenthart JF, Biochemistry 2000 May 23;39(20):6012-21. PMID:10821673
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (673 Kb) [Save to disk]
  • Biological Unit Coordinates (1hd4.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1HD4
  • CSU: Contacts of Structural Units for 1HD4
  • Original NMR restraints for 1HD4 from PDB
  • Retrieve 1HD4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HD4 from S2C, [Save to disk]
    • View 1HD4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 1HD4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HD4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hd4a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hd4_A] [1hd4]
  • SWISS-PROT database: [P01215]
  • Domain organization of [GLHA_HUMAN] by SWISSPFAM
  • Domain found in 1HD4: [GHA ] by SMART
    • Other resources with information on 1HD4
  • Community annotation for 1HD4 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1HD4 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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