1HE3 Biliverdin-Ix Beta Reductase date Nov 18, 2000
title Human Biliverdin Ix Beta Reductase: Nadpmesobiliverdin Iv A Ternary Complex
authors P.J.B.Pereira, S.Macedo-Ribeiro, A.Parraga, R.Perez-Luque, O.Cun K.Darcy, T.J.Mantle, M.Coll
compound source
Molecule: Biliverdin Ix Beta Reductase
Chain: A
Synonym: Flavin Reductase (Ec 1.6.99.1), Nadph-Dependent Di Nadph-Flavin Reductase, Biliverdin Reductase B, Green Heme Protein;
Ec: 1.3.1.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.200 49.400 107.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand MBV, NAP enzyme Oxidoreductase E.C.1.6.99.1 BRENDA
related structures by homologous chain: 1HE2, 1HE4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of human biliverdin IXbeta reductase, an early fetal bilirubin IXbeta producing enzyme., Pereira PJ, Macedo-Ribeiro S, Parraga A, Perez-Luque R, Cunningham O, Darcy K, Mantle TJ, Coll M, Nat Struct Biol 2001 Mar;8(3):215-20. PMID:11224564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1he3.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1HE3
  • CSU: Contacts of Structural Units for 1HE3
  • Likely Quarternary Molecular Structure file(s) for 1HE3
  • Retrieve 1HE3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HE3 from S2C, [Save to disk]
  • View 1HE3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HE3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1HE3 from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HE3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1he3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1he3] [1he3_A]
  • SWISS-PROT database: [P30043]
  • Domain organization of [BLVRB_HUMAN] by SWISSPFAM
  • Other resources with information on 1HE3
  • Community annotation for 1HE3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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