1HG8 Hydrolase date Dec 13, 2000
title Endopolygalacturonase From The Phytopathogenic Fungus Fusari Moniliforme
authors L.Federici, C.Caprari, B.Mattei, C.Savino, G.De Lorenzo, F.Cervon D.Tsernoglou
compound source
Molecule: Endopolygalacturonase
Chain: A
Engineered: Yes
Organism_scientific: Fusarium Moniliforme
Organism_taxid: 117187
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.260 61.590 98.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural requirements of endopolygalacturonase for the interaction with PGIP (polygalacturonase-inhibiting protein)., Federici L, Caprari C, Mattei B, Savino C, Di Matteo A, De Lorenzo G, Cervone F, Tsernoglou D, Proc Natl Acad Sci U S A. 2001 Nov 6;98(23):13425-30. Epub 2001 Oct 30. PMID:11687632
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1hg8.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1HG8
  • CSU: Contacts of Structural Units for 1HG8
  • Likely Quarternary Molecular Structure file(s) for 1HG8
  • Structure Factors (336 Kb)
  • Retrieve 1HG8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HG8 from S2C, [Save to disk]
  • Re-refined 1hg8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HG8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HG8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HG8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hg8a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1hg8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hg8_A] [1hg8]
  • SWISS-PROT database: [Q07181]
  • Domain organization of [PGLR_GIBFU] by SWISSPFAM
  • Domain found in 1HG8: [PbH1 ] by SMART
  • Other resources with information on 1HG8
  • Community annotation for 1HG8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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