1HGZ Virus date Dec 17, 2000
title Filamentous Bacteriophage Ph75
authors D.M.Pederson, L.C.Welsh, D.A.Marvin, M.Sampson, R.N.Perham, M.Yu, M.R.Slater
compound source
Molecule: Ph75 Inovirus Major Coat Protein
Chain: A
Synonym: Ph75 Bacteriophage Major Coat Protein
Other_details: Major Coat Protein Assembly
Organism_scientific: Bacteriophage Ph75
Organism_common: Inovirus Ph75
Organism_taxid: 144736
Other_details: Grown In Thermus Thermophilus
symmetry Space Group: P 1
R_factor 0.22 R_Free 0.40
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Fiber Diffractionresolution 2.4 Å
note 1HGZ is a representative structure
related structures by homologous chain: 1HGV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe protein capsid of filamentous bacteriophage PH75 from Thermus thermophilus., Pederson DM, Welsh LC, Marvin DA, Sampson M, Perham RN, Yu M, Slater MR, J Mol Biol 2001 Jun 1;309(2):401-21. PMID:11371161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1hgz.pdb1.gz) 428 Kb
  • CSU: Contacts of Structural Units for 1HGZ
  • Likely Quarternary Molecular Structure file(s) for 1HGZ
  • Retrieve 1HGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HGZ from S2C, [Save to disk]
  • View 1HGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HGZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HGZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hgza_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1hgz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hgz] [1hgz_A]
  • SWISS-PROT database: [P82889]
  • Domain organization of [CAPSD_BPH75] by SWISSPFAM
  • Other resources with information on 1HGZ
  • Community annotation for 1HGZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HGZ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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