1HI1 Rna Polymerase date Jan 01, 2001
title Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6 P Ntp
authors J.M.Grimes, S.J.Butcher, E.V.Makeyev, D.H.Bamford, D.I.Stuart
compound source
Molecule: P2 Protein
Chain: A, B, C
Synonym: Rna-Directed Rna Polymerase
Engineered: Yes
 Organism_scientific: Bacteriophage Phi-6
Organism_common: Phage Phi 6
Organism_taxid: 10879
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.650 92.700 140.790 90.00 101.09 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand ATP enzyme
related structures by homologous chain: 1HHT, 1HI0
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • RNA-directed 5'-3' RNA polym...


    • Primary referenceA mechanism for initiating RNA-dependent RNA polymerization., Butcher SJ, Grimes JM, Makeyev EV, Bamford DH, Stuart DI, Nature 2001 Mar 8;410(6825):235-40. PMID:11242087
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk]
  • Biological Unit Coordinates (1hi1.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (1hi1.pdb2.gz) 111 Kb
  • Biological Unit Coordinates (1hi1.pdb3.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 1HI1
  • CSU: Contacts of Structural Units for 1HI1
  • Likely Quarternary Molecular Structure file(s) for 1HI1
  • Retrieve 1HI1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HI1 from S2C, [Save to disk]
    • View 1HI1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HI1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HI1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hi1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hi1b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hi1c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1f1hi1, region I:1-100 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hi1_C] [1hi1_B] [1hi1_A] [1hi1]
  • SWISS-PROT database: [P11124]
  • Domain organization of [RDRP_BPPH6] by SWISSPFAM
    • Other resources with information on 1HI1
  • Community annotation for 1HI1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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