1HIB Cytokine date Mar 29, 1993
title The Structure Of An Interleukin-1 Beta Mutant With Reduced B Shows Multiple Subtle Changes In Conformation That Affect P Protein Recognition
authors N.P.Camacho, D.R.Smith, A.Goldman, B.Schneider, D.Green, P.R.Youn H.M.Berman
compound source
Molecule: Interleukin-1 Beta
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 65 2 2
R_factor 0.190 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.430 55.430 241.940 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1ITB, 8I1B
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of an interleukin-1 beta mutant with reduced bioactivity shows multiple subtle changes in conformation that affect protein-protein recognition., Camacho NP, Smith DR, Goldman A, Schneider B, Green D, Young PR, Berman HM, Biochemistry 1993 Aug 31;32(34):8749-57. PMID:8364024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1hib.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1HIB
  • Likely Quarternary Molecular Structure file(s) for 1HIB
  • Structure Factors (64 Kb)
  • Retrieve 1HIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HIB from S2C, [Save to disk]
  • Re-refined 1hib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1HIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HIB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HIB, from MSDmotif at EBI
  • Genome occurence of 1HIB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hib__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1hib from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hib_A] [1hib]
  • SWISS-PROT database: [P01584]
  • Belongs to the interleukin 1 (il1) family according to TCDB.
  • Domain organization of [IL1B_HUMAN] by SWISSPFAM
  • Domain found in 1HIB: [IL1 ] by SMART
    • Other resources with information on 1HIB
  • Community annotation for 1HIB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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