1HKN Growth Factor date Mar 10, 2003
title A Complex Between Acidic Fibroblast Growth Factor And 5-Amino-2-Naphthalenesulfonate
authors C.Fernandez-Tornero, R.M.Lozano, G.Gimenez-Gallego, A.Romero
compound source
Molecule: Heparin-Binding Growth Factor 1
Chain: A, B, C, D, E, F
Synonym: Hbgf-1, Acidic Fibroblast Growth Factor, Afgf, Beta-Endothelial Cell Growth Factor, Ecgf- Beta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 2 1
R_factor 0.228 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.530 47.210 97.840 90.00 107.04 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand N2M enzyme
related structures by homologous chain: 1K5U, 1PZZ
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceLeads for development of new naphthalenesulfonate derivatives with enhanced antiangiogenic activity: Crystal structure of acidic fibroblast growth factor in complex with 5-amino-2-naphthalenesulfonate., Fernandez-Tornero C, Lozano RM, Redondo-Horcajo M, Gomez AM, Lopez JC, Quesada E, Uriel C, Valverde S, Cuevas P, Romero A, Gimenez-Gallego G, J Biol Chem 2003 Apr 3;. PMID:12676958
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (1hkn.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (1hkn.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (1hkn.pdb3.gz) 25 Kb
  • Biological Unit Coordinates (1hkn.pdb4.gz) 25 Kb
  • Biological Unit Coordinates (1hkn.pdb5.gz) 24 Kb
  • Biological Unit Coordinates (1hkn.pdb6.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1HKN
  • CSU: Contacts of Structural Units for 1HKN
  • Likely Quarternary Molecular Structure file(s) for 1HKN
  • Structure Factors (416 Kb)
  • Retrieve 1HKN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HKN from S2C, [Save to disk]
  • Re-refined 1hkn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HKN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HKN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HKN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hkna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hknb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hknc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1hknd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1hkne_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1hknf_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 1hkn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hkn_B] [1hkn] [1hkn_A] [1hkn_F] [1hkn_D] [1hkn_E] [1hkn_C]
  • SWISS-PROT database: [P05230]
  • Domain organization of [FGF1_HUMAN] by SWISSPFAM
  • Domain found in 1HKN: [FGF ] by SMART
  • Other resources with information on 1HKN
  • Community annotation for 1HKN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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