1HL5 Oxidoreductase date Mar 13, 2003
title The Structure Of Holo Type Human Cu, Zn Superoxide Dismutase
authors R.W.Strange, S.Antonyuk, M.A.Hough, P.Doucette, J.Rodriguez, P.J. L.J.Hayward, J.S.Valentine, S.S.Hasnain
compound source
Molecule: Superoxide Dismutase
Chain: A, H, B, I, C, J, D, K, E, L, F, M, G, N, O, Q, P, S
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
Expression_system_strain: Eg118
Expression_system_variant: Yep351
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.871 172.380 112.450 90.00 93.45 90.00
method X-Ray Diffractionresolution 1.8 Å
ligand CA, CU, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1HL4, 1PTZ
Gene
Ontology
ChainFunctionProcessComponent
S, F, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, I, G
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceThe structure of holo and metal-deficient wild-type human Cu, Zn superoxide dismutase and its relevance to familial amyotrophic lateral sclerosis., Strange RW, Antonyuk S, Hough MA, Doucette PA, Rodriguez JA, Hart PJ, Hayward LJ, Valentine JS, Hasnain SS, J Mol Biol 2003 May 9;328(4):877-91. PMID:12729761
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (445 Kb) [Save to disk]
  • Biological Unit Coordinates (1hl5.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (1hl5.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (1hl5.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (1hl5.pdb4.gz) 57 Kb
  • Biological Unit Coordinates (1hl5.pdb5.gz) 56 Kb
  • Biological Unit Coordinates (1hl5.pdb6.gz) 54 Kb
  • Biological Unit Coordinates (1hl5.pdb7.gz) 55 Kb
  • Biological Unit Coordinates (1hl5.pdb8.gz) 55 Kb
  • Biological Unit Coordinates (1hl5.pdb9.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1HL5
  • CSU: Contacts of Structural Units for 1HL5
  • Likely Quarternary Molecular Structure file(s) for 1HL5
  • Structure Factors (2001 Kb)
  • Retrieve 1HL5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HL5 from S2C, [Save to disk]
  • Re-refined 1hl5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HL5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HL5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HL5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hl5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hl5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hl5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1hl5d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1hl5e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1hl5f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1hl5g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1hl5h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1hl5i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1hl5j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1hl5k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1hl5l_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1hl5m_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1hl5n_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1hl5o_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1hl5p_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1hl5q_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1hl5s_, region S [Jmol] [rasmolscript] [script source]
  • Fold representative 1hl5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hl5_E] [1hl5_J] [1hl5_F] [1hl5_Q] [1hl5_K] [1hl5_P] [1hl5_M] [1hl5_L] [1hl5_S] [1hl5] [1hl5_D] [1hl5_C] [1hl5_B] [1hl5_G] [1hl5_O] [1hl5_A] [1hl5_H] [1hl5_I] [1hl5_N]
  • SWISS-PROT database: [P00441]
  • Domain organization of [SODC_HUMAN] by SWISSPFAM
  • Other resources with information on 1HL5
  • Community annotation for 1HL5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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