1HLV Dna Binding Protein Dna date Dec 04, 2000
title Crystal Structure Of Cenp-B(1-129) Complexed With The Cenp- B Box Dna
authors Y.Tanaka, O.Nureki, H.Kurumizaka, S.Fukai, S.Kawaguchi, M.Ikuta, J.Iwahara, T.Okazaki, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Cenp-B Box Dna
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.

Molecule: Cenp-B Box Dna
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.

Molecule: Major Centromere Autoantigen B
Chain: A
Fragment: Dna Binding Domain
Synonym: Cenp-B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cenp-B
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15d
symmetry Space Group: P 31 1 2
R_factor 0.222 R_Free 0.260
length a length b length c angle alpha angle beta angle gamma
83.374 83.374 139.021 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1BW6

Primary referenceCrystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA., Tanaka Y, Nureki O, Kurumizaka H, Fukai S, Kawaguchi S, Ikuta M, Iwahara J, Okazaki T, Yokoyama S, EMBO J 2001 Dec 3;20(23):6612-8. PMID:11726497
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1hlv.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 1HLV
  • Likely Quarternary Molecular Structure file(s) for 1HLV
  • Structure Factors (133 Kb)
  • Retrieve 1HLV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HLV from S2C, [Save to disk]
  • Re-refined 1hlv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HLV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HLV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HLV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hlva1, region A:1-66 [Jmol] [rasmolscript] [script source]
        - Domain d1hlva2, region A:67-131 [Jmol] [rasmolscript] [script source]
  • Fold representative 1hlv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hlv_A] [1hlv_C] [1hlv] [1hlv_B]
  • SWISS-PROT database: [P07199]
  • Domain organization of [CENPB_HUMAN] by SWISSPFAM
  • Domain found in 1HLV: [CENPB ] by SMART
  • Other resources with information on 1HLV
  • Community annotation for 1HLV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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