1HLW STRUCTURE OF THE H122A MUTANT OF THE NUCLEOSIDE DIPHOSPHATE KINASE date
authors Admiraal, S.J., Meyer, P., Schneider, B., Deville-Bonne, D., Janin, J., Herschlag, D.
compound source
symmetry
R_factor
R_Free 0.2080000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
related structures by homologous chain: 1F3F, 1F6T
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceChemical rescue of phosphoryl transfer in a cavity mutant: a cautionary tale for site-directed mutagenesis., Admiraal SJ, Meyer P, Schneider B, Deville-Bonne D, Janin J, Herschlag D, Biochemistry 2001 Jan 16;40(2):403-13. PMID:11148034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1hlw.pdb1.gz) 149 Kb
  • CSU: Contacts of Structural Units for 1HLW
  • Likely Quarternary Molecular Structure file(s) for 1HLW
  • Retrieve 1HLW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HLW from S2C, [Save to disk]
  • View 1HLW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HLW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HLW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hlwa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1hlw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hlw_A] [1hlw]
  • SWISS-PROT database: [P22887]
  • Domain organization of [NDKC_DICDI] by SWISSPFAM
  • Domain found in 1HLW: [NDK ] by SMART
  • Other resources with information on 1HLW
  • Community annotation for 1HLW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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