1HM5 Isomerase date Dec 04, 2000
title Crystal Structure Analysis Of The Rabbit D-Glucose 6-Phospha Isomerase (No Ligand Bound)
authors D.A.Arsenieva, C.J.Jeffery, R.Hardre, L.Salmon
compound source
Molecule: Phosphoglucose Isomerase
Chain: A, B
Synonym: D-Glucose 6-Phosphate Isomerase
Ec: 5.3.1.9
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Other_details: Rabbit Skeletal Muscle Tissue
symmetry Space Group: C 2 2 21
R_factor 0.183 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.756 115.966 271.845 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Isomerase E.C.5.3.1.9 BRENDA
related structures by homologous chain: 1JIQ, 1U0G
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • cytokine activity


    • Primary referenceConformational changes in phosphoglucose isomerase induced by ligand binding., Arsenieva D, Jeffery CJ, J Mol Biol 2002 Oct 11;323(1):77-84. PMID:12368100
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (1hm5.pdb1.gz) 191 Kb
  • CSU: Contacts of Structural Units for 1HM5
  • Likely Quarternary Molecular Structure file(s) for 1HM5
  • Structure Factors (886 Kb)
  • Retrieve 1HM5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HM5 from S2C, [Save to disk]
  • Re-refined 1hm5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1HM5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HM5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HM5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hm5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hm5b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hm5_B] [1hm5] [1hm5_A]
  • SWISS-PROT database: [Q9N1E2]
  • Domain organization of [G6PI_RABIT] by SWISSPFAM
    • Other resources with information on 1HM5
  • Community annotation for 1HM5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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