1HMA Dna-Binding date May 12, 1994
title The Solution Structure And Dynamics Of The Dna Binding Domai From Drosophila Melanogaster
authors D.N.M.Jones, M.A.Searles, G.L.Shaw, M.E.A.Churchill, S.S.Ner, J.K A.A.Travers, D.Neuhaus
compound source
Molecule: Hmg-D
Chain: A
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
methodSolution NMR
related structures by homologous chain: 1E7J, 1QRV
Primary referenceThe solution structure and dynamics of the DNA-binding domain of HMG-D from Drosophila melanogaster., Jones DN, Searles MA, Shaw GL, Churchill ME, Ner SS, Keeler J, Travers AA, Neuhaus D, Structure 1994 Jul 15;2(7):609-27. PMID:7922039
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (395 Kb) [Save to disk]
  • Biological Unit Coordinates (1hma.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1HMA
  • Retrieve 1HMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HMA from S2C, [Save to disk]
    • View 1HMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HMA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HMA, from MSDmotif at EBI
  • Genome occurence of 1HMA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hma__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hma_A] [1hma]
  • SWISS-PROT database: [Q05783]
  • Domain organization of [HMGD_DROME] by SWISSPFAM
  • Domain found in 1HMA: [HMG ] by SMART
    • Other resources with information on 1HMA
  • Community annotation for 1HMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1HMA from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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