1HMF Dna-Binding date Mar 07, 1994
title Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
authors H.M.Weir, P.J.Kraulis, C.S.Hill, A.R.C.Raine, E.D.Laue, J.O.Thoma
compound source
Molecule: High Mobility Group Protein Fragment-B
Chain: A
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
methodSolution NMR
related structures by homologous chain: 1HME, 1HSM
Primary referenceStructure of the HMG box motif in the B-domain of HMG1., Weir HM, Kraulis PJ, Hill CS, Raine AR, Laue ED, Thomas JO, EMBO J 1993 Apr;12(4):1311-9. PMID:8467791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (625 Kb) [Save to disk]
  • Biological Unit Coordinates (1hmf.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1HMF
  • Retrieve 1HMF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HMF from S2C, [Save to disk]
  • View 1HMF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HMF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HMF, from MSDmotif at EBI
  • Genome occurence of 1HMF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hmf__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hmf_A] [1hmf]
  • SWISS-PROT database: [P63159]
  • Domain organization of [HMGB1_RAT] by SWISSPFAM
  • Domain found in 1HMF: [HMG ] by SMART
  • Other resources with information on 1HMF
  • Community annotation for 1HMF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HMF from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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