1HNF T Lymphocyte Adhesion Glycoprotein date Aug 10, 1994
title Crystal Structure Of The Extracellular Region Of The Human C Adhesion Molecule Cd2 At 2.5 Angstroms Resolution
authors D.L.Bodian, E.Y.Jones, K.Harlos, D.I.Stuart, S.J.Davis
compound source
Molecule: Cd2
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Ovary
symmetry Space Group: P 31 2 1
R_factor 0.193 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.300 88.300 51.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand NA, NAG enzyme
related structures by homologous chain: 1GYA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the extracellular region of the human cell adhesion molecule CD2 at 2.5 A resolution., Bodian DL, Jones EY, Harlos K, Stuart DI, Davis SJ, Structure 1994 Aug 15;2(8):755-66. PMID:7994575
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1hnf.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1HNF
  • CSU: Contacts of Structural Units for 1HNF
  • Likely Quarternary Molecular Structure file(s) for 1HNF
  • Retrieve 1HNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HNF from S2C, [Save to disk]
  • View 1HNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HNF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HNF, from MSDmotif at EBI
  • Genome occurence of 1HNF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hnf_2, region 105-182 [Jmol] [rasmolscript] [script source]
        - Domain d1hnf_1, region 4-104 [Jmol] [rasmolscript] [script source]
  • Fold representative 1hnf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hnf] [1hnf_A]
  • SWISS-PROT database: [P06729]
  • Domain organization of [CD2_HUMAN] by SWISSPFAM
  • Other resources with information on 1HNF
  • Community annotation for 1HNF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HNF from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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