1HOD Membrane Protein date Dec 10, 2000
title Nmr Structure Of D130i Mutant T3-I2, A 32 Residue Peptide From The Alpha 2a Adrenergic Receptor
authors D.A.Chung, E.R.Zuiderweg, R.R.Neubig
compound source
Molecule: Alpha-2a Adrenergic Receptor
Chain: A
Fragment: Second Intracellular Loop (Residues 118-149)
Synonym: Alpha-2a Adrenoceptor
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Sequence Of The Peptide Occurs Naturally In Homo Sapiens (Human).
methodSolution NMR
related structures by homologous chain: 1HO9, 1HOF
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceNMR structure of the second intracellular loop of the alpha 2A adrenergic receptor: evidence for a novel cytoplasmic helix., Chung DA, Zuiderweg ER, Fowler CB, Soyer OS, Mosberg HI, Neubig RR, Biochemistry 2002 Mar 19;41(11):3596-604. PMID:11888275
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1HOD
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1HOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HOD from S2C, [Save to disk]
  • View 1HOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HOD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HOD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hoda_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1hod from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hod_A] [1hod]
  • SWISS-PROT database: [P08913]
  • Domain organization of [ADA2A_HUMAN] by SWISSPFAM
  • Other resources with information on 1HOD
  • Community annotation for 1HOD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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