1HOQ Dna, Rna date Dec 11, 2000
title Chimeric Rnadna Hairpin
authors A.Y.Denisov, K.Gehring
compound source
Molecule: Dnarna (5'-R(Gpgpapc)-D(Ptptpcpgpgptp
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: Solid Phase Synthesis, Phosphoramidite Chemi
methodSolution NMR
Primary referenceSolution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids., Denisov AY, Noronha AM, Wilds CJ, Trempe JF, Pon RT, Gehring K, Damha MJ, Nucleic Acids Res 2001 Nov 1;29(21):4284-93. PMID:11691916
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1hoq.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 1HOQ
  • Original NMR restraints for 1HOQ from PDB
  • Retrieve 1HOQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HOQ from S2C, [Save to disk]
    • View 1HOQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HOQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HOQ, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hoq_A] [1hoq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1HOQ
  • Community annotation for 1HOQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science