1HPK Serine Protease date Aug 14, 1996
title Solution Nmr Structure Of The Human Plasminogen Kringle 1 Do Complexed With 6-Aminohexanoic Acid At Ph 5.3, 310k, Derive Randomly Generated Structures Using Simulated Annealing, Mi Average Structure
authors M.Rejante, M.Llinas
compound source
Molecule: Plasminogen
Chain: A
Fragment: Kringle 1 Domain
Other_details: Contains The 6-Aminohexanoic Acid Ligand
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood Plasma
methodSolution NMR
ligand ACA BindingDB enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1HPJ
Primary referenceSolution structure of the epsilon-aminohexanoic acid complex of human plasminogen kringle 1., Rejante MR, Llinas M, Eur J Biochem 1994 May 1;221(3):939-49. PMID:8181476
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1hpk.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1HPK
  • CSU: Contacts of Structural Units for 1HPK
  • Original NMR restraints for 1HPK from PDB
  • Retrieve 1HPK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HPK from S2C, [Save to disk]
  • View 1HPK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HPK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HPK, from MSDmotif at EBI
  • Genome occurence of 1HPK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hpk__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1hpk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hpk_A] [1hpk]
  • SWISS-PROT database: [P00747]
  • Domain organization of [PLMN_HUMAN] by SWISSPFAM
  • Domain found in 1HPK: [KR ] by SMART
  • Other resources with information on 1HPK
  • Community annotation for 1HPK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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