1HPZ Transferase date Dec 13, 2000
title Human Immunodeficiency Virus Type 1
authors J.Ding, Y.Hsiou, E.Arnold
compound source
Molecule: Pol Polyprotein
Chain: A
Fragment: P66 Subunit
Synonym: Reverse Transcriptase
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bh10 Isolate
Other_details: Hiv-1 Clone 12

Molecule: Pol Polyprotein
Chain: B
Fragment: P51 Subunit
Synonym: Reverse Transcriptase
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bh10 Isolate
Other_details: Hiv-1 Clone 12
symmetry Space Group: C 1 2 1
R_factor 0.254 R_Free 0.343
crystal
cell
length a length b length c angle alpha angle beta angle gamma
223.100 69.000 104.000 90.00 106.80 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand AAP enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1RT7, 1T05
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe Lys103Asn mutation of HIV-1 RT: a novel mechanism of drug resistance., Hsiou Y, Ding J, Das K, Clark AD Jr, Boyer PL, Lewi P, Janssen PA, Kleim JP, Rosner M, Hughes SH, Arnold E, J Mol Biol 2001 Jun 1;309(2):437-45. PMID:11371163
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (1hpz.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 1HPZ
  • CSU: Contacts of Structural Units for 1HPZ
  • Likely Quarternary Molecular Structure file(s) for 1HPZ
  • Structure Factors (306 Kb)
  • Retrieve 1HPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HPZ from S2C, [Save to disk]
  • Re-refined 1hpz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HPZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HPZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hpza2, region A:1-429 [Jmol] [rasmolscript] [script source]
        - Domain d1hpza1, region A:430-556 [Jmol] [rasmolscript] [script source]
        - Domain d1hpzb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1hpz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hpz] [1hpz_A] [1hpz_B]
  • SWISS-PROT database: [P03366]
  • Domain organization of [POL_HV1B1] by SWISSPFAM
  • Other resources with information on 1HPZ
  • Community annotation for 1HPZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HPZ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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